RetrogeneDB ID: | retro_hsap_59 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:5567048..5567498(+) | ||
Located in intron of: | ENSG00000205488 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000178363 | |
Aliases: | CALML3, CLP | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM3 | ||
Ensembl ID: | ENSG00000160014 | ||
Aliases: | CALM3, HEL-S-72, PHKD, PHKD3 | ||
Description: | calmodulin 3 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1449] |
Percent Identity: | 84.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MADQLTEEQ..EFKEAFSLFDKDGDG.ITT.ELGTVMRSLGQNPTEAEL.DM..E.D.DGNGT.DFPEFL | |
Retrocopy | MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
.MMARKMKDTD.EEEIREAFRVFDKDGNG..SAAELRHVMT.LGEKL.DEEVDEMIR.AD.DGDGQVNYE | |
Retrocopy | GMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYE |
Parental | EFVQMMTAK |
EFV.....K | |
Retrocopy | EFVRVLVSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 154 .91 RPM |
bodymap2_adrenal | 0 .00 RPM | 158 .45 RPM |
bodymap2_brain | 0 .05 RPM | 956 .47 RPM |
bodymap2_breast | 0 .91 RPM | 119 .03 RPM |
bodymap2_colon | 0 .00 RPM | 245 .57 RPM |
bodymap2_heart | 0 .00 RPM | 116 .97 RPM |
bodymap2_kidney | 0 .41 RPM | 134 .98 RPM |
bodymap2_liver | 0 .00 RPM | 48 .12 RPM |
bodymap2_lung | 0 .00 RPM | 172 .28 RPM |
bodymap2_lymph_node | 0 .00 RPM | 189 .77 RPM |
bodymap2_ovary | 0 .02 RPM | 324 .33 RPM |
bodymap2_prostate | 0 .07 RPM | 347 .86 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 88 .67 RPM |
bodymap2_testis | 1 .15 RPM | 295 .13 RPM |
bodymap2_thyroid | 0 .09 RPM | 173 .87 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 284 .35 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_5355 | 1687 libraries | 43 libraries | 16 libraries | 13 libraries | 70 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_83 |
Gorilla gorilla | retro_ggor_187 |
Pongo abelii | retro_pabe_45 |
Mus musculus | retro_mmus_50 |
Rattus norvegicus | retro_rnor_318 |
Equus caballus | retro_ecab_59 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |