RetrogeneDB ID: | retro_ggor_988 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:23226710..23227156(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198668 | ||
Ensembl ID: | ENSGGOG00000000212 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF |
MADQLTE.QIAEFKEAFSLF.KDGDGTITT.KE.GTVMRSLGQNPTEAELQDMINEVDADGNGT.DFPEF | |
Retrocopy | MADQLTERQIAEFKEAFSLFNKDGDGTITT<KESGTVMRSLGQNPTEAELQDMINEVDADGNGTVDFPEF |
Parental | LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY |
LTMMARKMKDTDSEEEIR.AF.VFDKDGNGYISA.EL.HVMTNLGE.LTD.EVDEMIR..DIDGDGQ..Y | |
Retrocopy | LTMMARKMKDTDSEEEIRDAFCVFDKDGNGYISATELHHVMTNLGENLTDDEVDEMIR*PDIDGDGQMIY |
Parental | EEFVQMMTAK |
EEFV.MMTAK | |
Retrocopy | EEFV*MMTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 3354 .19 RPM |
SRP007412_cerebellum | 0 .24 RPM | 1156 .57 RPM |
SRP007412_heart | 0 .00 RPM | 192 .15 RPM |
SRP007412_kidney | 0 .12 RPM | 327 .19 RPM |
SRP007412_liver | 0 .08 RPM | 148 .80 RPM |
SRP007412_testis | 0 .41 RPM | 611 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1255 |
Pan troglodytes | retro_ptro_3043 |
Pongo abelii | retro_pabe_1045 |