RetrogeneDB ID: | retro_mmus_2879 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:133113926..133114256(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Calm3 | ||
Ensembl ID: | ENSMUSG00000019370 | ||
Aliases: | Calm3, CaMA, R75142 | ||
Description: | calmodulin 3 [Source:MGI Symbol;Acc:MGI:103249] |
Percent Identity: | 75.44 % |
Parental protein coverage: | 74.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | RSLGQNPTEA-ELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL |
R.LGQNPTEA..LQ.MINEVDADG.GT.DFPE.LTMMARK..D.DSEEEIR..F.V.D.D.NGYISAAEL | |
Retrocopy | RCLGQNPTEA<KLQNMINEVDADGIGTVDFPELLTMMARKIRDIDSEEEIRASFCVLDQDSNGYISAAEL |
Parental | RHVMTNLGEKLTDEEVDEMIREADIDG-DGQ-VNYEEFVQMMTA |
..VM.NLGE.LTDEE.D.MIREADIDG.DGQ..NY.EFV.M.TA | |
Retrocopy | CDVMRNLGENLTDEEIDGMIREADIDG<DGQ<GNYKEFVPMITA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .12 RPM | 1087 .59 RPM |
SRP007412_cerebellum | 0 .17 RPM | 1092 .09 RPM |
SRP007412_heart | 0 .06 RPM | 194 .07 RPM |
SRP007412_kidney | 0 .10 RPM | 271 .81 RPM |
SRP007412_liver | 0 .03 RPM | 56 .58 RPM |
SRP007412_testis | 0 .05 RPM | 618 .48 RPM |