RetrogeneDB ID: | retro_mmus_454 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:71039712..71040019(-) | ||
Located in intron of: | ENSMUSG00000026196 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000089965 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Calm3 | ||
Ensembl ID: | ENSMUSG00000019370 | ||
Aliases: | Calm3, CaMA, R75142 | ||
Description: | calmodulin 3 [Source:MGI Symbol;Acc:MGI:103249] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 69.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE-VDADG-NGTIDFPEFLTMMA |
.EQIAE.K.A.SL..KDG..T..TKELG..MR.L..NP..AELQDM..E....DG.NG.I.FP....M.A | |
Retrocopy | KEQIAELKAAESLSGKDGNDTTETKELGVAMRLLC*NPVDAELQDMVQE<MHVDG<NGIIHFPKY*VMVA |
Parental | RKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHV |
RK.KDTDS.EEI...F.V.DKDG.G..S.AE..H. | |
Retrocopy | RKGKDTDSKEEICKVFQVSDKDGDGHVSPAERYHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1087 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1092 .09 RPM |
SRP007412_heart | 0 .00 RPM | 194 .07 RPM |
SRP007412_kidney | 0 .02 RPM | 271 .81 RPM |
SRP007412_liver | 0 .00 RPM | 56 .58 RPM |
SRP007412_testis | 0 .00 RPM | 618 .48 RPM |