RetrogeneDB ID: | retro_meug_2172 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold98081:2723..3162(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MYL6 | ||
Ensembl ID: | ENSMEUG00000001272 | ||
Aliases: | None | ||
Description: | myosin, light chain 6, alkali, smooth muscle and non-muscle [Source:HGNC Symbol;Acc:7587] |
Percent Identity: | 64.19 % |
Parental protein coverage: | 97.35 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | DFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLD-FEHFL |
DFT..Q..EFKEAFQLF.RTGD.K.LYSQ.GDV...L.QN..N..VLKVL.NPKS.EMNVKVLD.F.HFL | |
Retrocopy | DFTKYQIIEFKEAFQLFNRTGDRKVLYSQHGDVICILDQNLSNGKVLKVLRNPKSYEMNVKVLD>FKHFL |
Parental | PMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLITLGEKMTEEEVEVLVAGHEDSNGCINY |
P.LQTV.K..DQG..E..V.G..V.DKE.NG.V...EI.HVLI.L..K.TEE.VEVLVA..EDS.G.INY | |
Retrocopy | PVLQTVTKTWDQGPHEY*VVGI*VLDKE-NGSVIATEI*HVLISLSQKITEEVVEVLVAEYEDSYGYINY |
Parental | EAFVRHIL |
E......L | |
Retrocopy | ENLI*KLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000092841 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000001272 | 1 retrocopy |
retro_meug_2172 ,
|
Macropus eugenii | ENSMEUG00000006905 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000031838 | 6 retrocopies | |
Mus musculus | ENSMUSG00000090841 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000205 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017371 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004647 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005080 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004472 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000025467 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023318 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000485 | 8 retrocopies |