RetrogeneDB ID: | retro_shar_510 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL849728.1:1013764..1014214(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MYL6 | ||
Ensembl ID: | ENSSHAG00000004472 | ||
Aliases: | None | ||
Description: | myosin, light chain 6, alkali, smooth muscle and non-muscle [Source:HGNC Symbol;Acc:7587] |
Percent Identity: | 70.39 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | CDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFL |
CDF.......FKE.FQLFD.TG.GK.L.SQCGD....LGQN.T...VLK.L.NPKSDEMNVKV..FEHFL | |
Retrocopy | CDFKGNKMEAFKEPFQLFDQTGNGKFLNSQCGDLI*VLGQNFTKTQVLKLLKNPKSDEMNVKVPNFEHFL |
Parental | PMLQTVAKNKDQGTYEDYVEGLRVFDK-EGNGTVMGAEIRHVLITLGEKMTEEEVEVL-VAGHEDSNGCI |
P.LQTVAKNKDQGTYED.VE.L..F.K.E.NGT.M..EI.H.LITL.EKM.EEEVEV....GHEDSNGCI | |
Retrocopy | PILQTVAKNKDQGTYEDHVERL*IFYK<ERNGTIMRVEI*HILITLDEKMPEEEVEVV>ESGHEDSNGCI |
Parental | NYEELVRMVLNG |
NYEELV..VLNG | |
Retrocopy | NYEELVWIVLNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000092841 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000001272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031838 | 6 retrocopies | |
Mus musculus | ENSMUSG00000090841 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000205 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017371 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004647 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005080 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004472 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000025467 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023318 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000485 | 8 retrocopies |