RetrogeneDB ID: | retro_mmul_211 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:66850417..66850867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000002881 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2449 | ||
Ensembl ID: | ENSMMUG00000031838 | ||
Aliases: | None | ||
Description: | myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:RefSeq peptide;Acc:NP_001180478] |
Percent Identity: | 87.25 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHF |
MCDFTEDQTAEFKEAFQLFDR.GDGKIL..Q.GDVMRALGQNPTN.EVL.VLGNPKS.EMNVKVL.FEH. | |
Retrocopy | MCDFTEDQTAEFKEAFQLFDRIGDGKILCNQYGDVMRALGQNPTNTEVLNVLGNPKSNEMNVKVLEFEHL |
Parental | LPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCIN |
LP.LQTVAKNKDQGTYEDYVEGL.VFDKEGNGTVMG.E...VLVTLGEK.TEEEVE.LVAG.E.SNGCIN | |
Retrocopy | LPILQTVAKNKDQGTYEDYVEGLQVFDKEGNGTVMGVEFWLVLVTLGEKITEEEVEVLVAGNEGSNGCIN |
Parental | YEAFVRHIL |
YEAFVRHIL | |
Retrocopy | YEAFVRHIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 57 .37 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 100 .91 RPM |
SRP007412_cerebellum | 0 .06 RPM | 58 .05 RPM |
SRP007412_heart | 0 .00 RPM | 265 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 173 .24 RPM |
SRP007412_liver | 0 .00 RPM | 100 .82 RPM |
SRP007412_testis | 0 .00 RPM | 37 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1786 |
Pan troglodytes | retro_ptro_1196 |
Gorilla gorilla | retro_ggor_2233 |
Pongo abelii | retro_pabe_1467 |
Callithrix jacchus | retro_cjac_2566 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000092841 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000001272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005214 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031838 | 6 retrocopies | |
Mus musculus | ENSMUSG00000090841 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000205 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017371 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004647 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005080 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004472 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000025467 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023318 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000485 | 8 retrocopies |