Parental gene: | MMU.2449, ENSMMUG00000031838 |
| Aliases: | None |
| Description: | myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:RefSeq peptide;Acc:NP_001180478] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 11:53216976..53220143(+) |
>ENSMMUG00000031838
ATGTGTGACTTCACCGAAGACCAGACCGCAGAGTTCAAGGAGGCCTTCCAGCTGTTTGACCGAACAGGTGATGGCAAGAT
CCTGTACAGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAACCCTACCAACGCCGAGGTGCTCAAGGTCCTGGGGA
ACCCCAAGAGTGATGAGATGAACGTGAAGGTGCTGGACTTTGAGCACTTTCTGCCCATGCTGCAGACAGTGGCCAAGAAC
AAGGACCAGGGCACCTATGAGGATTATGTCGAAGGACTTCGGGTGTTTGACAAGGAAGGAAATGGCACTGTCATGGGTGC
TGAAATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCACGAGG
ACAGCAATGGTTGTATCAACTATGAAGCGTTTGTGAGGCATATCCTGTCGGGGTGA
ATGTGTGACTTCACCGAAGACCAGACCGCAGAGTTCAAGGAGGCCTTCCAGCTGTTTGACCGAACAGGTGATGGCAAGAT
CCTGTACAGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAACCCTACCAACGCCGAGGTGCTCAAGGTCCTGGGGA
ACCCCAAGAGTGATGAGATGAACGTGAAGGTGCTGGACTTTGAGCACTTTCTGCCCATGCTGCAGACAGTGGCCAAGAAC
AAGGACCAGGGCACCTATGAGGATTATGTCGAAGGACTTCGGGTGTTTGACAAGGAAGGAAATGGCACTGTCATGGGTGC
TGAAATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCACGAGG
ACAGCAATGGTTGTATCAACTATGAAGCGTTTGTGAGGCATATCCTGTCGGGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 100 .91 RPM |
| SRP007412_brain | 57 .37 RPM |
| SRP007412_cerebellum | 58 .05 RPM |
| SRP007412_heart | 265 .63 RPM |
| SRP007412_kidney | 173 .24 RPM |
| SRP007412_liver | 100 .82 RPM |
| SRP007412_testis | 37 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000092841 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000001272 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005214 | within_species_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000090841 | possible_ortholog | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000205 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017371 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000034596 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004647 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000005080 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000004472 | ortholog_one2many | 6 retrogenes | |
| Sus scrofa | ENSSSCG00000025467 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023318 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000000485 | possible_ortholog | 8 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_96 | 100.00 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_211 | 87.25 | 98.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmul_1633 | 98.68 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmul_1663 | 75.89 | 91.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmul_2221 | 89.54 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmul_2410 | 75.76 | 86.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000031838 retrocopies