RetrogeneDB ID: | retro_shar_765 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864727.1:141436..141794(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MYL6 | ||
Ensembl ID: | ENSSHAG00000004472 | ||
Aliases: | None | ||
Description: | myosin, light chain 6, alkali, smooth muscle and non-muscle [Source:HGNC Symbol;Acc:7587] |
Percent Identity: | 59.35 % |
Parental protein coverage: | 80.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYED-YVEGLRVFDKE |
Q.G.V...L.QNPTN.EVLK.L.N.KS...NVKV.DFEHFLPMLQT..KNK.Q..Y.D..VE.L..FD.E | |
Retrocopy | QNGIVI*SLEQNPTNSEVLKALKNFKSHKINVKVQDFEHFLPMLQTIVKNKGQDIYND<LVEVLCAFDNE |
Parental | GNGTV-MGAEIRHVLITLGEKMTEEEVEVLVAGHEDSNGCINYEELVRMVLNG |
G...V..G.E..HVLI.L.E.MTEE...VL...HE.SN...N.EELV.M.LNG | |
Retrocopy | GKSMV<QGVEL*HVLISLDE-MTEEQGKVLFSEHENSNNYTNSEELVWMLLNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000092841 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000001272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031838 | 6 retrocopies | |
Mus musculus | ENSMUSG00000090841 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000205 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017371 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004647 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005080 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004472 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000025467 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023318 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000485 | 8 retrocopies |