RetrogeneDB ID: | retro_mluc_1446 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429840:2424936..2425321(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.33 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EMKTYIPPKGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ |
EMKTY.PPKG..K........P.KRPPSAFFLFCSE..P.IKGE.P..S.GD.AKKLGE.W...AA.DKQ | |
Retrocopy | EMKTY-PPKGKAKRNSRTSVHP>KRPPSAFFLFCSEHCPQIKGEYPIPSTGDAAKKLGEVWSSPAAGDKQ |
Parental | PYEKKAAKLKEKYEKDIAAYRAKGKP-DAAKKGVVKAEKSKKKK-EEEEDEEDDEEEEEEED |
PY.KKAAKLK.K..KDI..Y..KGKP..AAKKG.V.AEK..K.....E.D.E....E..... | |
Retrocopy | PYAKKAAKLKDK*RKDIPEYPTKGKP<YAAKKGIVEAEKARKRR>ADEKDVEEGDKEQDDNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |