RetrogeneDB ID: | retro_itri_825 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393328.1:8544207..8544747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.85 % |
Parental protein coverage: | 97.46 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | GKGDPKKPRGK-MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
G.G.PKK.RGK...SY.F.VQTC.EEHKK.HP...V.FSEFSKKCSE.WKTMSA.EK.K.EDMAK.DKA. | |
Retrocopy | GEGEPKKLRGK<VLSYRFLVQTCQEEHKK-HP---VKFSEFSKKCSESWKTMSAEEKEKLEDMAKVDKAH |
Parental | YEREMKT-YIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA |
Y..EMKT...PPKGET.KK.FK...APKRPP.A.F.FCSEY.P.I.......S.GDVAK..GE......A | |
Retrocopy | YGKEMKT<RFPPKGET<KK-FKNSSAPKRPPPA-F*FCSEYCPQIRTS--SSSTGDVAKEQGEVRSDPGA |
Parental | DDKQPYEKKAAKLKEKYEKKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDVE |
......E...AK..EK.E.KD...Y.A...................K.EE.EDV. | |
Retrocopy | QSVL*KEGY*AK--EKCE-KDTGGYQANXXXXXXXXXXXXXXXQENKEEEDEDVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |