RetrogeneDB ID: | retro_itri_1580 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393553.1:1926799..1927213(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.79 % |
Parental protein coverage: | 71.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF-EDMAKADKA |
M.KG.PKKPRGK...YA...QT..E..KK.HPDA.V.FSEFSKKCSE.WKTM..KEK.K..EDMA..DK. | |
Retrocopy | MSKGTPKKPRGKLLTYASLLQTLWE-NKKQHPDAVVCFSEFSKKCSEKWKTMCVKEKEKV<EDMAEVDKV |
Parental | RYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK-IKGEHPGLSIGDVAKKLGEMWNNTAA |
.YER.MKTYI..KGETK.KFKDP.A.K.PP.A.F.F.....PK.IKG.HPGLSIG...KKL..MWNN..A | |
Retrocopy | HYERGMKTYILSKGETKRKFKDPKASKGPPMA-FCFVLSSAPK>IKGRHPGLSIGNTEKKLRKMWNNMDA |
Parental | DD |
.D | |
Retrocopy | ED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |