RetrogeneDB ID: | retro_mluc_506 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429767:2785239..2785780(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000029254 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.17 % |
Parental protein coverage: | 83.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDAS-VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
MG.GDPKKPRG.MSS.AFFVQTCR.E..KK........FSEFSKKCSERWKTMSAKEKGKFED.AKADKA | |
Retrocopy | MG*GDPKKPRGNMSSNAFFVQTCR-EEQKKKHQDA<FSFSEFSKKCSERWKTMSAKEKGKFEDLAKADKA |
Parental | RYEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFL--FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT |
RYEREMKTYIPPKGET.KK...............FL..F........KGEHPGLSIGDVAKKLGEMWNNT | |
Retrocopy | RYEREMKTYIPPKGET<KKEIQGSQCTQEASFGLFLVLF*VSXXXXXKGEHPGLSIGDVAKKLGEMWNNT |
Parental | AADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK |
AADDKQP.EKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK | |
Retrocopy | AADDKQPHEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |