RetrogeneDB ID: | retro_itri_1060 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393366.1:585719..586100(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.84 % |
Parental protein coverage: | 64.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDA-SVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
MGKGDPKKPRGKMSSYAF.VQTC.EEHKKKHPD...VNFSEFSK.CSERWKTM.AKE.GK.ED.AK.DK. | |
Retrocopy | MGKGDPKKPRGKMSSYAFLVQTCQEEHKKKHPDS<LVNFSEFSKQCSERWKTMFAKEMGKYEDTAKVDKV |
Parental | RYEREMKTYIPPKGETKK-KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK |
.YE.EMKTYI..KGETKK.KFKDPNA.KRPP.AFFLFCS.Y.P.IKGEHPG.SIGD... | |
Retrocopy | HYEKEMKTYILSKGETKK>KFKDPNALKRPPMAFFLFCSGYCPQIKGEHPGVSIGDTGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |