RetrogeneDB ID:

retro_mmul_1642

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:155204987..155205257(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SRSF3
Ensembl ID:ENSMMUG00000014306
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmul_1642
GTGGAAGTGTCAAATGGTGAAAACAAAAAAGTAAGAAGTAGAAATCGTGGCCCACCTGCCTCTTGGGGGCCTCACCCTCA
AGATGATTATCGTAGAAGGAGTCTGCCACTTTGCTGCAGATCTCTAAGAAGGAGAAGCTTCTCTCACAGCCAGAGCAGTT
TCCTTTCTAGAAACAGGAGAAGAGAGAGACCACTGTCTTGGGAGAGAAATCACAAGTTGTCCCGATCCTTCTCTAGGTCT
CATAGCAGATCTAGGTCAAATGAAAGGAAA

ORF - retro_mmul_1642 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.44 %
Parental protein coverage: 53.05 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVELSNGEK---RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERN
VE.SNGE....RSRNRGPP.SWG..P.DDYRRRS.P...RS.RRRSFS.S.S..LSR.RRRER.LS.ERN
RetrocopyVEVSNGENKKVRSRNRGPPASWGPHPQDDYRRRSLPLCCRSLRRRSFSHSQSSFLSRNRRRERPLSWERN
ParentalHKPSRSFSRSRSRSRSNERK
HK.SRSFSRS.SRSRSNERK
RetrocopyHKLSRSFSRSHSRSRSNERK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 75 .63 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 61 .00 RPM
SRP007412_cerebellum 0 .00 RPM 107 .84 RPM
SRP007412_heart 0 .00 RPM 91 .04 RPM
SRP007412_kidney 0 .00 RPM 86 .50 RPM
SRP007412_liver 0 .00 RPM 51 .10 RPM
SRP007412_testis 0 .00 RPM 140 .14 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1642 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1642 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_1642 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 10 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000160625 retrocopies
Echinops telfairi ENSETEG000000101172 retrocopies
Loxodonta africana ENSLAFG000000181932 retrocopies
Myotis lucifugus ENSMLUG000000106716 retrocopies
Macaca mulatta ENSMMUG00000014306 4 retrocopies
Macaca mulatta ENSMMUG000000164941 retrocopy
Mus musculus ENSMUSG000000711729 retrocopies
Otolemur garnettii ENSOGAG000000005026 retrocopies
Sus scrofa ENSSSCG000000015641 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000142805 retrocopies



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