RetrogeneDB ID: | retro_mmul_2359 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:98526203..98526499(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSMMUG00000014306 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58. % |
Parental protein coverage: | 60.37 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRR-SPRRRSFSRSR |
.DAADAV.ELDGR.L..C.VR.ELSNGEKRSRN.GPP.S....PRDD..R..PP..RR.S......S... | |
Retrocopy | QDAADAV*ELDGRWLGDCPVRIELSNGEKRSRNDGPPIS*DCHPRDDHHRSPPPLHRR<SKKEKLLSQGE |
Parental | SRSLSRDRRRERSLSRERNHKPSRSFSRSR |
.....R.....RSLS.E.NHKPSRSFSRS. | |
Retrocopy | CLPF*R*EKTRRSLSWEKNHKPSRSFSRSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 75 .63 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 61 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 107 .84 RPM |
SRP007412_heart | 0 .00 RPM | 91 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 86 .50 RPM |
SRP007412_liver | 0 .00 RPM | 51 .10 RPM |
SRP007412_testis | 0 .00 RPM | 140 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2776 |
Gorilla gorilla | retro_ggor_2746 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010117 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000014306 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies |