RetrogeneDB ID: | retro_mmul_2154 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:63844172..63844650(+) | ||
Located in intron of: | ENSMMUG00000000617 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18030 | ||
Ensembl ID: | ENSMMUG00000016494 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | RDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMR |
RDAEDAIYGRNGYDYGQC.LRVEFPRTYGGRGGWP.GG.N.P.TRRSDFRVLVS.LPPSGSWQDLKDHMR | |
Retrocopy | RDAEDAIYGRNGYDYGQCWLRVEFPRTYGGRGGWPHGGGN*PSTRRSDFRVLVSALPPSGSWQDLKDHMR |
Parental | EAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGR |
...DVCYA.VQKDGVGMVEYLRK.DMEYALRKLDD.KF.SH..ETSYIRVYPER.TSYGYSRSRSGSRGR | |
Retrocopy | AVWDVCYAHVQKDGVGMVEYLRKADMEYALRKLDDIKFYSHDSETSYIRVYPERRTSYGYSRSRSGSRGR |
Parental | DSPYQSRG-SPHYFSPFRPY |
DSPY.SRG.SPH.FSPFRPY | |
Retrocopy | DSPY*SRG>SPHHFSPFRPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .01 RPM | 24 .43 RPM |
SRP007412_brain_prefrontal_cortex | 2 .62 RPM | 27 .13 RPM |
SRP007412_cerebellum | 1 .23 RPM | 24 .60 RPM |
SRP007412_heart | 0 .35 RPM | 15 .13 RPM |
SRP007412_kidney | 0 .35 RPM | 36 .97 RPM |
SRP007412_liver | 1 .07 RPM | 24 .58 RPM |
SRP007412_testis | 1 .13 RPM | 27 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014306 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy |
retro_mmul_2154 ,
|
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |