Parental gene:

SRSF3, ENSMMUG00000014306

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:36347671..36356665(+)


>ENSMMUG00000014306
ATGCATCGTGATTCCTGTCCATTGGACTGTAAGGTTTATGTAGGCAATCTTGGAAACAATGGCAACAAGACCGAATTGGA
ACGGGCTTTTGGCTACTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCACCCGGCTTTGCTTTTGTTGAATTTG
AAGATCCCCGAGATGCAGCTGATGCGGTCCGAGAGCTAGATGGAAGAACACTATGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAAAGAAGTAGAAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAG
GAGTCCTCCACCTCGTCGCAGATCTCCACGAAGGAGAAGCTTCTCTCGCAGCCGAAGCAGGTCCCTTTCTAGAGATAGGA
GAAGAGAGAGATCTCTGTCTCGGGAGAGAAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAATAG

Library Parental gene expression (RPM)
SRP007412_brain 75 .63 RPM
SRP007412_brain_prefrontal_cortex 61 .00 RPM
SRP007412_cerebellum 107 .84 RPM
SRP007412_heart 91 .04 RPM
SRP007412_kidney 86 .50 RPM
SRP007412_liver 51 .10 RPM
SRP007412_testis 140 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016062 possible_ortholog 5 retrogenes
retro_cjac_1035, retro_cjac_1969, retro_cjac_2006, retro_cjac_620, retro_cjac_746,
Echinops telfairi ENSETEG00000010117 ortholog_one2one 2 retrogenes
retro_etel_2064, retro_etel_445,
Loxodonta africana ENSLAFG00000018193 possible_ortholog 2 retrogenes
retro_lafr_1219, retro_lafr_80,
Myotis lucifugus ENSMLUG00000010671 possible_ortholog 6 retrogenes
retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Macaca mulatta ENSMMUG00000016494 other_paralog 1 retrogene
retro_mmul_2154,
Mus musculus ENSMUSG00000071172 possible_ortholog 9 retrogenes
retro_mmus_100, retro_mmus_1347, retro_mmus_1749, retro_mmus_2294, retro_mmus_2337, retro_mmus_2433, retro_mmus_2654, retro_mmus_2933, retro_mmus_3629,
Otolemur garnettii ENSOGAG00000000502 possible_ortholog 6 retrogenes
retro_ogar_1850, retro_ogar_1959, retro_ogar_2131, retro_ogar_2783, retro_ogar_597, retro_ogar_803,
Sus scrofa ENSSSCG00000001564 possible_ortholog 1 retrogene
retro_sscr_1038,
Ictidomys tridecemlineatus ENSSTOG00000014280 possible_ortholog 5 retrogenes
retro_itri_123, retro_itri_502, retro_itri_664, retro_itri_857, retro_itri_901,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1007 83.44 92.07
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2. retro_mmul_1042 86.16 96.95
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3. retro_mmul_1642 74.44 53.05
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4. retro_mmul_2359 58.00 60.37
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Download FASTA sequences of all ENSMMUG00000014306 retrocopies