RetrogeneDB ID: | retro_mmul_451 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:199816641..199817364(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2328 | ||
Ensembl ID: | ENSMMUG00000006489 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828] |
Percent Identity: | 85.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
MDKN.LVQKAKLAE.AERYDDMAACMKSV.E.GAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE | |
Retrocopy | MDKNGLVQKAKLAEEAERYDDMAACMKSVIEPGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
GAEKKQQMARE.REKIETELRD...DVLSLLEKFLIP..S...S..F.......Y....A....GDD.KG | |
Retrocopy | GAEKKQQMAREHREKIETELRDVSDDVLSLLEKFLIP-TSREQSLLFENERLLSYLAEVA---TGDDRKG |
Parental | IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
IVDQSQQAYQE.FEISKKEMQPTHPIRLGLALNFSVFYYEIL.SPEK.CSLAKTAFDEAIAELDTLSEES | |
Retrocopy | IVDQSQQAYQEVFEISKKEMQPTHPIRLGLALNFSVFYYEILKSPEKVCSLAKTAFDEAIAELDTLSEES |
Parental | YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
YKDS.LIM.LLRDNLTLWTSDTQGDEAEAGEGGEN | |
Retrocopy | YKDSRLIM*LLRDNLTLWTSDTQGDEAEAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 470 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .56 RPM | 603 .38 RPM |
SRP007412_cerebellum | 0 .19 RPM | 291 .68 RPM |
SRP007412_heart | 0 .06 RPM | 88 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 112 .56 RPM |
SRP007412_liver | 0 .08 RPM | 31 .79 RPM |
SRP007412_testis | 0 .00 RPM | 133 .55 RPM |