RetrogeneDB ID: | retro_fcat_1563 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:72588949..72589690(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022420 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSFCAG00000032017 | ||
Aliases: | None | ||
Description: | Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta polypeptide [Source:UniProtKB/TrEMBL;Acc:A8D084] |
Percent Identity: | 96.39 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EHPVMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIE |
EHPVMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNE.R.LLSVAYKNVVGARRSSWRVVSSIE | |
Retrocopy | EHPVMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNE-RKLLSVAYKNVVGARRSSWRVVSSIE |
Parental | QKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGD |
QK.EGAEKKQQMAREYREKIETELR.ICNDVLSLLEKFLIPNASQAE.KVFYLKMKGDYY.YLAEVAAGD | |
Retrocopy | QKMEGAEKKQQMAREYREKIETELREICNDVLSLLEKFLIPNASQAERKVFYLKMKGDYYCYLAEVAAGD |
Parental | DKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTL |
DKKGIVDQSQQAYQEAFEISKKEMQPTHPI.LGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTL | |
Retrocopy | DKKGIVDQSQQAYQEAFEISKKEMQPTHPISLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTL |
Parental | SEESYKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
SEESYKDSTL.MQLLRDNLTLWTSDTQGDEAEA.EGGEN | |
Retrocopy | SEESYKDSTLVMQLLRDNLTLWTSDTQGDEAEA-EGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 6 .31 RPM | 736 .95 RPM |
SRP017611_kidney | 0 .82 RPM | 163 .14 RPM |
SRP017611_liver | 0 .20 RPM | 50 .24 RPM |