Parental gene:

MMU.2328, ENSMMUG00000006489

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:RefSeq peptide;Acc:NP_001247828]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:8:103441493..103476402(-)


>ENSMMUG00000006489
ATGGATAAAAATGAGCTGGTTCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGCATGAA
GTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAGTTGCTTATAAAAATGTTGTAGGAG
CCCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTGAACAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATGGCTCGA
GAATACAGAGAGAAAATTGAGACGGAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCC
CAATGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGATTACTATCGTTACTTGGCTGAGGTTGCCG
CTGGTGATGACAAGAAAGGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAATCAGCAAAAAGGAAATG
CAACCAACACATCCTATCAGACTGGGTCTGGCCCTTAACTTCTCTGTGTTCTATTATGAGATTCTGAACTCCCCAGAGAA
AGCCTGCTCTCTTGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATACAAAGACA
GCACGCTAATAATGCAATTACTGAGAGACAACTTGACATTGTGGACATCGGATACCCAAGGAGACGAAGCTGAAGCAGGA
GAAGGAGGGGAAAATTAA

Library Parental gene expression (RPM)
SRP007412_brain 470 .05 RPM
SRP007412_brain_prefrontal_cortex 603 .38 RPM
SRP007412_cerebellum 291 .68 RPM
SRP007412_heart 88 .86 RPM
SRP007412_kidney 112 .56 RPM
SRP007412_liver 31 .79 RPM
SRP007412_testis 133 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008694 ortholog_one2one 2 retrogenes
retro_acar_25, retro_acar_44,
Bos taurus ENSBTAG00000000236 possible_ortholog 4 retrogenes
retro_btau_1482, retro_btau_635, retro_btau_68, retro_btau_910,
Canis familiaris ENSCAFG00000000580 possible_ortholog 6 retrogenes
retro_cfam_1302, retro_cfam_1521, retro_cfam_158, retro_cfam_1840, retro_cfam_233, retro_cfam_465,
Choloepus hoffmanni ENSCHOG00000002798 ortholog_one2one 9 retrogenes
retro_chof_1572, retro_chof_1703, retro_chof_1890, retro_chof_2321, retro_chof_2346, retro_chof_2669, retro_chof_292, retro_chof_315, retro_chof_933,
Callithrix jacchus ENSCJAG00000015844 ortholog_one2one 5 retrogenes
retro_cjac_1769, retro_cjac_2164, retro_cjac_3000, retro_cjac_31, retro_cjac_881,
Cavia porcellus ENSCPOG00000020285 ortholog_one2one 5 retrogenes
retro_cpor_220, retro_cpor_323, retro_cpor_434, retro_cpor_592, retro_cpor_644,
Dasypus novemcinctus ENSDNOG00000001672 possible_ortholog 10 retrogenes
retro_dnov_1007, retro_dnov_117, retro_dnov_1354, retro_dnov_1579, retro_dnov_1769, retro_dnov_1907, retro_dnov_1993, retro_dnov_2588, retro_dnov_892, retro_dnov_99,
Ficedula albicollis ENSFALG00000005860 ortholog_one2one 1 retrogene
retro_falb_13,
Felis catus ENSFCAG00000032017 ortholog_one2one 4 retrogenes
retro_fcat_1563, retro_fcat_1631, retro_fcat_1697, retro_fcat_60,
Gallus gallus ENSGALG00000010725 ortholog_one2one 1 retrogene
retro_ggal_3,
Gorilla gorilla ENSGGOG00000022133 ortholog_one2one 9 retrogenes
retro_ggor_1092, retro_ggor_1754, retro_ggor_211, retro_ggor_2379, retro_ggor_2997, retro_ggor_2998, retro_ggor_3020, retro_ggor_499, retro_ggor_544,
Loxodonta africana ENSLAFG00000004944 ortholog_one2one 2 retrogenes
retro_lafr_1089, retro_lafr_112,
Myotis lucifugus ENSMLUG00000017323 ortholog_one2one 3 retrogenes
retro_mluc_1617, retro_mluc_1686, retro_mluc_296,
Macaca mulatta ENSMMUG00000013206 within_species_paralog 3 retrogenes
retro_mmul_1061, retro_mmul_236, retro_mmul_673,
Mus musculus ENSMUSG00000022285 ortholog_one2one 3 retrogenes
retro_mmus_163, retro_mmus_2187, retro_mmus_744,
Oryctolagus cuniculus ENSOCUG00000000734 ortholog_one2one 2 retrogenes
retro_ocun_1091, retro_ocun_248,
Pongo abelii ENSPPYG00000018791 possible_ortholog 7 retrogenes
retro_pabe_103, retro_pabe_1242, retro_pabe_2047, retro_pabe_3417, retro_pabe_3740, retro_pabe_556, retro_pabe_89,
Pelodiscus sinensis ENSPSIG00000003703 ortholog_one2one 1 retrogene
retro_psin_13,
Sarcophilus harrisii ENSSHAG00000012671 possible_ortholog 2 retrogenes
retro_shar_126, retro_shar_409,
Sus scrofa ENSSSCG00000006062 ortholog_one2one 2 retrogenes
retro_sscr_222, retro_sscr_35,
Ictidomys tridecemlineatus ENSSTOG00000023864 ortholog_one2one 3 retrogenes
retro_itri_162, retro_itri_483, retro_itri_887,
Taeniopygia guttata ENSTGUG00000012078 ortholog_one2one 1 retrogene
retro_tgut_4,
Tursiops truncatus ENSTTRG00000015906 ortholog_one2one 4 retrogenes
retro_ttru_15, retro_ttru_1540, retro_ttru_207, retro_ttru_455,
Vicugna pacos ENSVPAG00000005865 ortholog_one2one 1 retrogene
retro_vpac_350,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_451 85.31 100.00
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2. retro_mmul_1859 83.33 77.55
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3. retro_mmul_1883 93.06 100.00
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4. retro_mmul_2136 81.03 70.20
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5. retro_mmul_2247 69.94 68.98
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6. retro_mmul_2422 87.35 99.59
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7. retro_mmul_2503 73.81 68.57
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Download FASTA sequences of all ENSMMUG00000006489 retrocopies