RetrogeneDB ID:

retro_mmur_1493

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_69636:4140..4364(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SUMO1
Ensembl ID:ENSMICG00000008968
Aliases:None
Description:small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]


Retrocopy-Parental alignment summary:






>retro_mmur_1493
GAGGCAAAATCTTAAAATGAGGACTTAGGGTATAAGAAAGAAGGGAGAATACATTAAACTCATATCATTGGACAGGACAG
CAGTGAGACTCACTTCAAAGTTAAAATGACAATACATCTAAAGAAATTCAAAGAATCATACTGTCAAAGACAGGGTGTTC
AATGAATTCACTCAGGTTTTTTGTTGAAGATCAAACAATTGCTGATAATCATAATCCAGAAGAA

ORF - retro_mmur_1493 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.64 %
Parental protein coverage: 77.32 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalEAKPSTEDLGDKKEG-EYIKL-KVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV-PMNSLRFLFEGQRI
EAK...EDLG.KKEG.EYIKL...IGQDSSE.HFKVKMT.HLKK.KESYCQRQGV..MNSLRF..E.Q.I
RetrocopyEAKS*NEDLGYKKEG>EYIKL<HIIGQDSSETHFKVKMTIHLKKFKESYCQRQGV<SMNSLRFFVEDQTI
ParentalADNHTPKE
ADNH.P.E
RetrocopyADNHNPEE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1493 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1493 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 48 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000098596 retrocopies
Canis familiaris ENSCAFG000000124318 retrocopies
Felis catus ENSFCAG000000310056 retrocopies
Loxodonta africana ENSLAFG000000228555 retrocopies
Microcebus murinus ENSMICG00000008968 5 retrocopies
Microcebus murinus ENSMICG000000110112 retrocopies
Myotis lucifugus ENSMLUG000000075042 retrocopies
Macaca mulatta ENSMMUG000000052407 retrocopies
Otolemur garnettii ENSOGAG000000303451 retrocopy
Procavia capensis ENSPCAG000000068701 retrocopy
Pongo abelii ENSPPYG000000130833 retrocopies
Pan troglodytes ENSPTRG000000128171 retrocopy
Sarcophilus harrisii ENSSHAG000000119681 retrocopy



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