RetrogeneDB ID:

retro_mmul_373

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:54285170..54285464(+)
Located in intron of:ENSMMUG00000012055
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SUMO1
Ensembl ID:ENSMMUG00000005240
Aliases:None
Description:small ubiquitin-related modifier 1 [Source:RefSeq peptide;Acc:NP_001182571]


Retrocopy-Parental alignment summary:






>retro_mmul_373
CAGGAGGCAAAACCTTCAACTGAGGACTTGGGAGATAAGAAGGAAGGTGAATATATTAAACTCAAAGTCATTGGACAGGA
TAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCTTAGAATCATATTGTCAAAGACAGGGCG
TTCCAATGAATTCAATCAGGTATCTCTTTGAGGGTCAGAGAATTGCTGATAATCATACTCCAAAAGAACTGGGAATGGAG
GAAGAAGATGTGATTGAAGTTTATCAGGAACAAACGGGGGGTCATTCAACAGTT

ORF - retro_mmul_373 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.94 %
Parental protein coverage: 97.03 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD
QEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKL.ESYCQRQGVPMNS.R.LFEGQRIAD
RetrocopyQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLLESYCQRQGVPMNSIRYLFEGQRIAD
ParentalNHTPKELGMEEEDVIEVYQEQTGGHSTV
NHTPKELGMEEEDVIEVYQEQTGGHSTV
RetrocopyNHTPKELGMEEEDVIEVYQEQTGGHSTV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 4 .03 RPM
SRP007412_brain_prefrontal_cortex 0 .24 RPM 19 .99 RPM
SRP007412_cerebellum 0 .06 RPM 3 .04 RPM
SRP007412_heart 0 .12 RPM 1 .59 RPM
SRP007412_kidney 0 .00 RPM 4 .23 RPM
SRP007412_liver 0 .00 RPM 0 .75 RPM
SRP007412_testis 0 .08 RPM 1 .28 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_373 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_373 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_373 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 15 parental genes, and 55 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000098596 retrocopies
Canis familiaris ENSCAFG000000124318 retrocopies
Choloepus hoffmanni ENSCHOG000000097392 retrocopies
Felis catus ENSFCAG000000310056 retrocopies
Loxodonta africana ENSLAFG000000228555 retrocopies
Microcebus murinus ENSMICG000000089685 retrocopies
Myotis lucifugus ENSMLUG000000075042 retrocopies
Macaca mulatta ENSMMUG00000005240 7 retrocopies
Macaca mulatta ENSMMUG000000067603 retrocopies
Nomascus leucogenys ENSNLEG000000069974 retrocopies
Otolemur garnettii ENSOGAG000000303451 retrocopy
Procavia capensis ENSPCAG000000068701 retrocopy
Pongo abelii ENSPPYG000000130833 retrocopies
Pan troglodytes ENSPTRG000000128171 retrocopy
Sarcophilus harrisii ENSSHAG000000119681 retrocopy



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