RetrogeneDB ID: | retro_mmul_1108 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:74118320..74118614(-) | ||
Located in intron of: | ENSMMUG00000000187 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO1 | ||
Ensembl ID: | ENSMMUG00000005240 | ||
Aliases: | None | ||
Description: | small ubiquitin-related modifier 1 [Source:RefSeq peptide;Acc:NP_001182571] |
Percent Identity: | 60. % |
Parental protein coverage: | 94.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QEAKPSTEDLGDKKEG-EYIKLKVIGQDSSEIHFKVK-MTT--HLKKLKESYCQR-QGVPMNSLRFLFEG |
QEAK.ST.D..DK.E...Y...KVI..D.SE.H.KVK.MTT..H.KKLKESY.Q.....PMN...FLFEG | |
Retrocopy | QEAKASTMDFRDKREK<KYTLFKVIR*DNSEVHCKVK>MTTKKHPKKLKESYYQKIHRAPMNLFKFLFEG |
Parental | QRIADNHTPKELGMEEEDVIEVYQEQTGGH |
Q.IAD.HTP.EL.M...D.IEVYQE..GG. | |
Retrocopy | QKIADIHTPQELRMGL*DGIEVYQE*IGGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .03 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .04 RPM |
SRP007412_heart | 0 .00 RPM | 1 .59 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .23 RPM |
SRP007412_liver | 0 .00 RPM | 0 .75 RPM |
SRP007412_testis | 0 .00 RPM | 1 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_897 |
Gorilla gorilla | retro_ggor_725 |
Pongo abelii | retro_pabe_775 |
Equus caballus | retro_ecab_935 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009859 | 6 retrocopies | |
Canis familiaris | ENSCAFG00000012431 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009739 | 2 retrocopies | |
Felis catus | ENSFCAG00000031005 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000022855 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000008968 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000007504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005240 | 7 retrocopies |
retro_mmul_1108 , retro_mmul_2035, retro_mmul_2081, retro_mmul_313, retro_mmul_373, retro_mmul_450, retro_mmul_855,
|
Macaca mulatta | ENSMMUG00000006760 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006997 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000030345 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006870 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013083 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012817 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011968 | 1 retrocopy |