RetrogeneDB ID: | retro_mmus_1532 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:87549077..87549451(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000090753 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSMUSG00000073702 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHG.GFK..AP.ALKEI.KF.MKE.GTPDVRIDTRLNK | |
Retrocopy | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGLGFKMCAPWALKEIWKFTMKEVGTPDVRIDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY-VPVTTFKNLQTVNVDEN |
A..AKGIR.VPY.I.V.LSRK.NED..SP.K.YTLVTY..PVT.FKNLQTVNVDEN | |
Retrocopy | AISAKGIRIVPYHIQVCLSRKHNEDKNSPKKVYTLVTY<LPVTAFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 69 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .55 RPM |
SRP007412_heart | 0 .00 RPM | 65 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .00 RPM |
SRP007412_liver | 0 .00 RPM | 55 .14 RPM |
SRP007412_testis | 0 .96 RPM | 58 .23 RPM |