RetrogeneDB ID: | retro_ocun_1161 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:26974632..26974950(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.85 % |
Parental protein coverage: | 84.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPD-VRIDTRLNKAVWAKGIRNV-PYRIR |
NEV.TRE..I.IHK.IHGVGFKK......K...K..M.EM.TP..V..DT.L.KA.W.KGIRNV....I. | |
Retrocopy | NEVLTREHAISIHKDIHGVGFKKCLY*TFKDAYKCTMMEMETPS>VITDTGLEKAAWTKGIRNV<SHSIS |
Parental | VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD |
..L.RK.N....SPNK...LV...P...F..L.TVN.D | |
Retrocopy | RQLFRKYNKNTNSPNKV*VLVINAPDSIFEDLSTVNMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .07 RPM |
SRP017611_liver | 0 .00 RPM | 19 .35 RPM |