RetrogeneDB ID: | retro_btau_1777 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:124937023..124937368(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSBTAG00000019701 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3] |
Percent Identity: | 59.32 % |
Parental protein coverage: | 94.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MA.AKK.....KG..A.N..VTREYTIN.HK.I..V.FKK.AP..LK.I.K.AMK.M.TPDV..DT.L.K | |
Retrocopy | MALAKKWS--RKGHLAMNKIVTREYTINTHKCIQRVAFKKCAPGVLKWIQKSAMKKMETPDVHTDTSLSK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQ |
AVW.KGI.NV.......L.RK.NE.E.S...LYTLV..VP.TT.KNLQ | |
Retrocopy | AVWPKGISNVSHHVHLLLIRKCNEHEES-HQLYTLVSHVPLTTLKNLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 115 .35 RPM |
ERP005899_muscle | 0 .00 RPM | 1167 .11 RPM |
SRP017611_brain | 0 .00 RPM | 110 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .06 RPM |
SRP017611_liver | 0 .00 RPM | 89 .25 RPM |
SRP030211_testis | 0 .02 RPM | 139 .47 RPM |