RetrogeneDB ID: | retro_btau_867 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:45516384..45516731(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSBTAG00000019701 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX3] |
Percent Identity: | 71.79 % |
Parental protein coverage: | 92.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | APAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP-DVRIDTRLNK |
APAKKGGEKK...S.I.EVVTREYTINIHK.IHGVGFKK.APR.LKEI.K.AMKEMG.P.D..I.TR.NK | |
Retrocopy | APAKKGGEKKQYWSTISEVVTREYTINIHKCIHGVGFKKCAPRTLKEIWKCAMKEMGRP<DMSINTRFNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL |
..WA.GIRNVPYRI.V.L..K.NED.DSPNK.YTLVT.....T..NL | |
Retrocopy | RIWATGIRNVPYRIFVHLCGKCNEDKDSPNKPYTLVT*KHAITLENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 115 .35 RPM |
ERP005899_muscle | 0 .00 RPM | 1167 .11 RPM |
SRP017611_brain | 0 .00 RPM | 110 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .06 RPM |
SRP017611_liver | 0 .00 RPM | 89 .25 RPM |
SRP030211_testis | 0 .00 RPM | 139 .47 RPM |