RetrogeneDB ID:

retro_mmur_1606

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_92062:1491..1805(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMICG00000016059
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmur_1606
CCCACAAATAAAGATGGCAAGAAGAAGAGCTACTCTGCCATCAATGAAGTGGTGACCTGAGAAAACAAAATCAACATTCA
CAAGCATATCCATGGATAAGCTTCAAGAAGTGTGCCCTTTGGGCACATAAAGAGAAATATGTTGTGAAGGAGATAGAGAT
TCCAGATGTGCACATTAATACCAGGCTCAAAAAAAGAATAAGAAATATCCAATACCATTCCTTGTGTGGTTGTCCAGAAA
ACATGCTGAGGATGAAGAGTCACCAAAACATCCTCTATATATTGGTTACCTATGTACCTGTCACACTTGAAAAA

ORF - retro_mmur_1606 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.31 %
Parental protein coverage: 90.4 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalPAKKGGEKKKGRSAINEVVTREYTINIHKRIHG-VGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKA
P..K.G.KKK..SAINEVVT.E..INIHK.IHG...FKK.A..A.KE..K...KE...P....D...N..
RetrocopyPTNKDG-KKKSYSAINEVVT*ENKINIHKHIHG<ISFKKCALWAHKE--KYVVKEIEIP----DVHINTR
ParentalVWAKGIRNVPYR-IRVRLSRKRNEDEDSP-NKLYTLVTYVPVTTFK
...K.IRN..Y....V.LSRK..EDE.SP.N.LY.LVTYVPVT..K
RetrocopyL-KKRIRNIQYH<FLVWLSRKHAEDEESP>NILYILVTYVPVTLEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1606 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1606 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 113 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000079141 retrocopy
Bos taurus ENSBTAG000000197019 retrocopies
Latimeria chalumnae ENSLACG000000136031 retrocopy
Macropus eugenii ENSMEUG000000009638 retrocopies
Microcebus murinus ENSMICG00000016059 15 retrocopies
Myotis lucifugus ENSMLUG0000000250721 retrocopies
Monodelphis domestica ENSMODG000000017045 retrocopies
Mus musculus ENSMUSG0000007370241 retrocopies
Oryctolagus cuniculus ENSOCUG000000023929 retrocopies
Sarcophilus harrisii ENSSHAG000000117063 retrocopies



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