RetrogeneDB ID: | retro_mmus_1948 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:87236571..87237000(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081853 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mxi1 | ||
Ensembl ID: | ENSMUSG00000025025 | ||
Aliases: | Mxi1, ENSMUSG00000067085, Gm10197, Mad2, bHLHc11 | ||
Description: | Max interacting protein 1 [Source:MGI Symbol;Acc:MGI:97245] |
Percent Identity: | 78.62 % |
Parental protein coverage: | 63.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MERVRMINVQRLLEAAEFLERRERECEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRS |
ME.V.MINVQ.LLE..EFLE.R.RECEHGY.S.FPSMP.P.LQH.KPP.....AQKHSSGSSNTSTANRS | |
Retrocopy | MEQVQMINVQCLLETVEFLELR*RECEHGYVSCFPSMPNPWLQHLKPPTEVEPAQKHSSGSSNTSTANRS |
Parental | THNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFL |
THNE..KNR.AHLRLCL.RLK.LIPLGPDCTRHT.LGL.NKAKAHIKK.EEAE..SQHQL.NLEREQRFL | |
Retrocopy | THNEFKKNRQAHLRLCLKRLKALIPLGPDCTRHTRLGLPNKAKAHIKKREEAE--SQHQLKNLEREQRFL |
Parental | KRRLE |
K..L. | |
Retrocopy | KQQLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 48 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 71 .56 RPM |
SRP007412_heart | 0 .00 RPM | 30 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 44 .27 RPM |
SRP007412_liver | 0 .03 RPM | 18 .49 RPM |
SRP007412_testis | 0 .27 RPM | 60 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006556 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022901 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002479 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025025 | 1 retrocopy |
retro_mmus_1948 ,
|
Sus scrofa | ENSSSCG00000022128 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003400 | 2 retrocopies |