RetrogeneDB ID: | retro_vpac_483 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_238966:651..977(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MXI1 | ||
Ensembl ID: | ENSVPAG00000003400 | ||
Aliases: | None | ||
Description: | MAX interactor 1, dimerization protein [Source:HGNC Symbol;Acc:7534] |
Percent Identity: | 87.27 % |
Parental protein coverage: | 53.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | CEHGYASTFPSMPSPRLQHSKTPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIP |
CEHGYAS.FPS.PSP.LQHSKTPR.LS.AQKHSSGSS.TSTANRST.NELEKNRRAHLRL.L.RLKVLIP | |
Retrocopy | CEHGYASAFPSLPSPGLQHSKTPRMLSLAQKHSSGSSSTSTANRSTRNELEKNRRAHLRLGLGRLKVLIP |
Parental | LGPDCTRHTTLGLLNKAKAHIKKLEEAERK-SQH-QLENL |
LGPDC.RHTTLGL.NKAKAHIKKLEEAER..SQH.QLENL | |
Retrocopy | LGPDCARHTTLGLPNKAKAHIKKLEEAERR<SQHQQLENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006556 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022901 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002479 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025025 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003400 | 2 retrocopies |
retro_vpac_483 , retro_vpac_595,
|