RetrogeneDB ID: | retro_vpac_595 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_620:3524..4088(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MXI1 | ||
Ensembl ID: | ENSVPAG00000003400 | ||
Aliases: | None | ||
Description: | MAX interactor 1, dimerization protein [Source:HGNC Symbol;Acc:7534] |
Percent Identity: | 86.7 % |
Parental protein coverage: | 92.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LQHSKTPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNK |
LQHSKTPR.LS.AQKHSSGSS.TSTANRST.NELEKNRRAHLRL.L.RLKVLIPLGPDC.RHTTLGL.NK | |
Retrocopy | LQHSKTPRMLSLAQKHSSGSSSTSTANRSTRNELEKNRRAHLRLGLGRLKVLIPLGPDCARHTTLGLPNK |
Parental | AKAHIKKLEEAERKSQHQ-LENLEREQRFLKRRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVD |
AKAHIKKLEEAERKSQHQ.LENLE.EQR.LK..LEQLQGPQEMERIRMDSIGSTISSD.S.SE.EEIEV. | |
Retrocopy | AKAHIKKLEEAERKSQHQQLENLEGEQRLLKP*LEQLQGPQEMERIRMDSIGSTISSDHSASE*EEIEVG |
Parental | VESTEFSHGEVDNISTTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS |
VESTEF.H.EVD.ISTTSISDIDDH.S.QS.GS.EGYSS.SVKLSFTS | |
Retrocopy | VESTEFFHDEVDSISTTSISDIDDHHSPQSVGSEEGYSSSSVKLSFTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006556 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022901 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002479 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025025 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003400 | 2 retrocopies |
retro_vpac_483, retro_vpac_595 ,
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