RetrogeneDB ID: | retro_chof_1350 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_269973:206..624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MXI1 | ||
Ensembl ID: | ENSCHOG00000006556 | ||
Aliases: | None | ||
Description: | MAX interactor 1, dimerization protein [Source:HGNC Symbol;Acc:7534] |
Percent Identity: | 67.13 % |
Parental protein coverage: | 71.21 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEVER-KSQHQLENLEREQRFLKRRLEQLQGPQEMERI |
E.L.VLIPL..DCTRH...G.L..AKAH.K.L.E.ER.KSQHQLENLE.EQRFLK..LEQLQGPQEMERI | |
Retrocopy | EYLEVLIPLESDCTRHRQ-GFLYEAKAHFKRLDEAER<KSQHQLENLE*EQRFLKQ*LEQLQGPQEMERI |
Parental | RMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLQSIGSDEGYSS-ASVKLS |
..DS.GST.SSDRSD.EREE..VDVES...S.G.VD.IS..S..D..D.SS.Q..GS.EG.SS..SVKL. | |
Retrocopy | PVDSTGSTVSSDRSDWEREETAVDVESAGLSRGDVDSISPASSGDSEDSSSGQRVGSEEG*SS<SSVKLF |
Parental | FTS |
.TS | |
Retrocopy | STS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003047 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006556 | 2 retrocopies |
retro_chof_1350 , retro_chof_1817,
|
Cavia porcellus | ENSCPOG00000022901 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002479 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025025 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022128 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003400 | 2 retrocopies |