RetrogeneDB ID: | retro_mmus_2318 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:3258610..3259230(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081165 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox11 | ||
Ensembl ID: | ENSMUSG00000020544 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase assembly protein 11 [Source:MGI Symbol;Acc:MGI:1917052] |
Percent Identity: | 79.72 % |
Parental protein coverage: | 75.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QPPRRPRSSNPFQRAQEDEWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHSSDQ |
QP.R..RSSNPFQ..Q.DEW..RN.TVLTY.A.AAVGMLGASY.AVPLYR.YCQ.TGLGGSAVAGHSSDQ | |
Retrocopy | QPSR*LRSSNPFQCSQDDEWQWRNETVLTYMAMAAVGMLGASYVAVPLYRFYCQNTGLGGSAVAGHSSDQ |
Parental | IENMVPVKDRVIK-VTFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFE |
IEN.VPVKDR..K.VTFN.......QWNFRPQ.T..YVVP.ETALAFYKAKNPT.KPVI.ISTYNVVPFE | |
Retrocopy | IENGVPVKDRSVK<VTFNV----RFQWNFRPQ*TQFYVVPVETALAFYKAKNPTNKPVIIISTYNVVPFE |
Parental | AGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMVNVDLITLSY---TFFEAKEGHKLPVPG |
AGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAED.RM.N.D.ITLSY......EAKEGHK.PVP. | |
Retrocopy | AGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDLRMANGDPITLSYPPXXXXEAKEGHKFPVPS |
Parental | YN |
YN | |
Retrocopy | YN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .52 RPM |
SRP007412_heart | 0 .06 RPM | 6 .79 RPM |
SRP007412_kidney | 0 .13 RPM | 5 .06 RPM |
SRP007412_liver | 0 .00 RPM | 3 .14 RPM |
SRP007412_testis | 2 .10 RPM | 4 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000008482 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014862 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001207 | 1 retrocopy | |
Homo sapiens | ENSG00000166260 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005225 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014855 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020544 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007990 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004138 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008259 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009422 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046318 | 1 retrocopy |