RetrogeneDB ID: | retro_mmus_2714 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:3207868..3208704(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox11 | ||
Ensembl ID: | ENSMUSG00000020544 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase assembly protein 11 [Source:MGI Symbol;Acc:MGI:1917052] |
Percent Identity: | 73.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGGLWCPGWRLVASCGRGWRQPGWSGRTVVNAELVLR-PGWDGLGGAERGLRRLGTWKR--PCGVRGPAT |
MGGLWCP.WR.V..CG..W.QP.WSGR...N.EL.LR.PGW..LGG.E.GLR.LGTWKR...C....... | |
Retrocopy | MGGLWCPDWRFVTLCGQRWNQP*WSGRIGMNSELILRPPGWKELGGVEPGLRCLGTWKRLSECSPESHSL |
Parental | QPPRRPR---SSNPFQRAQEDEWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHS |
.P....R...SSNPFQ..QED.W..RNKTV.TYVA.A..GMLGASY.AVPLYRLYCQ.TGLGGSAVAGHS | |
Retrocopy | PPAQPSR*LRSSNPFQCSQEDKWLWRNKTVVTYVAMATEGMLGASYVAVPLYRLYCQNTGLGGSAVAGHS |
Parental | SDQIENMVPVKDR-VIKVTFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVV |
SDQIEN.VPVKDR...KVTFN.......QW.FRPQ.TEIYVVP.ETALAFYKAKNPT.KPVI.ISTYNVV | |
Retrocopy | SDQIENRVPVKDR<ISKVTFN----VRFQWIFRPQ*TEIYVVPVETALAFYKAKNPTHKPVIVISTYNVV |
Parental | PFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMVNVDLITLSY--TFFEAKEGHKLPV |
PFEAGQYFNKIQCFCF.EQRLNPQEEVDMPVFFYIDPEFAED.RM.NV..ITLSY.....EAKEGHK.PV | |
Retrocopy | PFEAGQYFNKIQCFCFKEQRLNPQEEVDMPVFFYIDPEFAEDLRMANVYPITLSYXXXXXEAKEGHKFPV |
Parental | PGYN |
P.YN | |
Retrocopy | PSYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .52 RPM |
SRP007412_heart | 0 .00 RPM | 6 .79 RPM |
SRP007412_kidney | 0 .02 RPM | 5 .06 RPM |
SRP007412_liver | 0 .00 RPM | 3 .14 RPM |
SRP007412_testis | 0 .00 RPM | 4 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000008482 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014862 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001207 | 1 retrocopy | |
Homo sapiens | ENSG00000166260 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005225 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014855 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020544 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007990 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004138 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008259 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009422 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046318 | 1 retrocopy |