RetrogeneDB ID: | retro_mmus_3170 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:4039856..4040183(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc42 | ||
Ensembl ID: | ENSMUSG00000006699 | ||
Aliases: | Cdc42, AI747189, AU018915 | ||
Description: | cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211] |
Percent Identity: | 91.74 % |
Parental protein coverage: | 57.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAV |
.VVSPSSFENVKEKW.PEITHHCPKTPFLLVGTQIDL.DDPSTIEKLA.NKQK.ITPETAEKLA.DLKAV | |
Retrocopy | TVVSPSSFENVKEKWAPEITHHCPKTPFLLVGTQIDLKDDPSTIEKLAMNKQKHITPETAEKLAQDLKAV |
Parental | KYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
KYVECSALTQKGLKNVFDEAILAALE.PEPKKS.R.VLL | |
Retrocopy | KYVECSALTQKGLKNVFDEAILAALELPEPKKSHRYVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 215 .97 RPM |
SRP007412_cerebellum | 0 .00 RPM | 169 .26 RPM |
SRP007412_heart | 0 .00 RPM | 99 .83 RPM |
SRP007412_kidney | 0 .06 RPM | 164 .91 RPM |
SRP007412_liver | 0 .00 RPM | 103 .20 RPM |
SRP007412_testis | 0 .05 RPM | 39 .11 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_141913 | 18 libraries | 5 libraries | 51 libraries | 57 libraries | 941 libraries |