RetrogeneDB ID: | retro_fcat_896 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:60694462..60694960(-) | ||
Located in intron of: | ENSFCAG00000002880 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004853 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.55 % |
Parental protein coverage: | 86.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE |
.K.PSEYVPTVFDNYA.TVM.GGEPYTLGLFDT.GQEDYDRLRPLSYPQTDVFLVCFS.VSPSSFENVKE | |
Retrocopy | SKLPSEYVPTVFDNYAITVMTGGEPYTLGLFDTIGQEDYDRLRPLSYPQTDVFLVCFSGVSPSSFENVKE |
Parental | KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGL |
.WVP.ITHHCPK.PF.LVGTQIDL.DDPS.IEKL.K.KQKP.TPETAEKLARDLKAVKYV.CSALTQKGL | |
Retrocopy | NWVPKITHHCPKAPFSLVGTQIDL*DDPSSIEKLVKSKQKPTTPETAEKLARDLKAVKYVQCSALTQKGL |
Parental | KNVFDEAILAALEPPEPKKTRRCVLL |
KNVFDEAILA.LEPPEPKKT..CVLL | |
Retrocopy | KNVFDEAILATLEPPEPKKTHACVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .65 RPM |
SRP017611_liver | 0 .00 RPM | 17 .29 RPM |