RetrogeneDB ID: | retro_cpor_33 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_594:80291..80867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000005806 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCPOG00000006543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVGDGAVGKTCLLISYTTNK.PSEY.PTVFDNYAVTVMI.GEPYTLGL.DTAGQEDYDRLRPL | |
Retrocopy | MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYIPTVFDNYAVTVMIDGEPYTLGLLDTAGQEDYDRLRPL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQTDVFLV.FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR.DPSTIEKLAKNKQKPITPE | |
Retrocopy | SYPQTDVFLVFFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRNDPSTIEKLAKNKQKPITPE |
Parental | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
TAEKLARDLKAVKYVECSALT.KGLKNVFDEAILAALEPPEPKKSRRCVLL | |
Retrocopy | TAEKLARDLKAVKYVECSALTHKGLKNVFDEAILAALEPPEPKKSRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .38 RPM | 70 .57 RPM |
SRP017611_kidney | 1 .99 RPM | 83 .54 RPM |
SRP017611_liver | 0 .65 RPM | 48 .58 RPM |
SRP040447_lung | 3 .81 RPM | 114 .91 RPM |
SRP040447_skeletal_muscle | 1 .80 RPM | 60 .05 RPM |