RetrogeneDB ID: | retro_mmus_970 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:97676873..97677492(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cfl1 | ||
Ensembl ID: | ENSMUSG00000056201 | ||
Aliases: | None | ||
Description: | cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757] |
Percent Identity: | 63.55 % |
Parental protein coverage: | 90.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KSSTPEEVK----KRKKAVLFCLSEDKKNIILEEGKEILVGDVG-QTVDDPYTTFVKMLPDKDCRYALYD |
K.S.P...K.....R.....FCLS.DKK.IILE..K.ILVGD.G.Q.V.DPYTTFVK.L.D.DC..AL.D | |
Retrocopy | KFSSPQHQK*RNTRRQFLHVFCLSNDKK-IILEKDKKILVGDEG>QAVYDPYTTFVKILTDMDCCSALHD |
Parental | ATYETKESKKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHE-LQANCYEEVKDRCTLAEKL-G |
ATY.T.ESKKE.L.F.F.AP.NAPLKS.MIYASSKD..KKKLTGIKHE..QANCY.E.KD.CTL.EK..G | |
Retrocopy | ATYKTEESKKENLMFVFQAPKNAPLKSEMIYASSKDGMKKKLTGIKHE<IQANCY-EIKDHCTLSEKV<G |
Parental | GSAVISLEGKPLSHPAPCLEHL-NSPRPALGCCRLPLSCQTGGAGGIPAGGGLSLHPSCQTSLPPPGPSF |
.SA.ISL..K.L...AP.LE.L..SPRP.LGCCRLPLS.....A.GIP.G.G..LHP..QTS.PP.G.S. | |
Retrocopy | DSASISLLSKELP-SAPYLEYL<SSPRPTLGCCRLPLSFKIREARGIPSGRG*FLHPNYQTSPPPSGDSS |
Parental | SLHP |
SL.P | |
Retrocopy | SLYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 385 .58 RPM |
SRP007412_cerebellum | 0 .00 RPM | 286 .45 RPM |
SRP007412_heart | 0 .00 RPM | 80 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 152 .73 RPM |
SRP007412_liver | 0 .00 RPM | 115 .90 RPM |
SRP007412_testis | 0 .00 RPM | 106 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000024955 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000001916 | 1 retrocopy | |
Felis catus | ENSFCAG00000013272 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000024685 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000019016 | 5 retrocopies | |
Mus musculus | ENSMUSG00000015932 | 1 retrocopy | |
Mus musculus | ENSMUSG00000056201 | 6 retrocopies |
retro_mmus_1729, retro_mmus_2103, retro_mmus_3127, retro_mmus_3556, retro_mmus_719, retro_mmus_970 ,
|
Mus musculus | ENSMUSG00000062929 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016503 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000020660 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000016751 | 2 retrocopies |