RetrogeneDB ID: | retro_mmul_493 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:53980828..53981264(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000006653 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4381 | ||
Ensembl ID: | ENSMMUG00000019016 | ||
Aliases: | CFL1, cofilin-1 | ||
Description: | cofilin-1 [Source:RefSeq peptide;Acc:NP_001253534] |
Percent Identity: | 86.99 % |
Parental protein coverage: | 97.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDA |
MKVRKSS.PEE.KK.KKA..FCLSEDKKNIILE.GKEILVGDVGQTVD.PY.TFV.MLPDKDCRYALYDA | |
Retrocopy | MKVRKSSMPEEAKKHKKAGFFCLSEDKKNIILEKGKEILVGDVGQTVDNPYTTFVRMLPDKDCRYALYDA |
Parental | TYETKESKKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCT-LAEKLGGS |
TY.TKESK.EDLVFIFWAPE..PLKSK.IYASSKD.IKKKLTGIKHELQANCYEEVKDRCT....KLGGS | |
Retrocopy | TYKTKESKEEDLVFIFWAPESGPLKSKIIYASSKDTIKKKLTGIKHELQANCYEEVKDRCT>RLKKLGGS |
Parental | AVISLE |
AVISLE | |
Retrocopy | AVISLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 229 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 401 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 146 .26 RPM |
SRP007412_heart | 0 .00 RPM | 71 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 130 .28 RPM |
SRP007412_liver | 0 .00 RPM | 123 .58 RPM |
SRP007412_testis | 0 .04 RPM | 82 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_384 |
Pan troglodytes | retro_ptro_298 |
Gorilla gorilla | retro_ggor_389 |
Pongo abelii | retro_pabe_325 |