RetrogeneDB ID: | retro_ocun_478 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:55594050..55594305(-) | ||
Located in intron of: | ENSOCUG00000006357 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000025604 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.12 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YALYDATYETKESKKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAE |
YALYDATYETKESKKEDLVFIFWAPEC.PLKSKMIY.SSKDAIKKKLTGIKHELQANCYEEVKD.CTL.E | |
Retrocopy | YALYDATYETKESKKEDLVFIFWAPECVPLKSKMIYTSSKDAIKKKLTGIKHELQANCYEEVKDCCTLVE |
Parental | KLGGSAVISLEGKPL |
KLGGSA.ISLEGKPL | |
Retrocopy | KLGGSADISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .39 RPM | 268 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 109 .57 RPM |
SRP017611_liver | 0 .08 RPM | 51 .33 RPM |