RetrogeneDB ID: | retro_fcat_303 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:227931019..227931516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013272 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.05 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIIL-EEGKEILV-GDVGQTVDDPYA |
ASGVAVSDGVIKV..D..V.KSSTPEEV.K.KKAV.FCLS.DKKNII..EEGKE.L...DVGQT.DD..A | |
Retrocopy | ASGVAVSDGVIKVSSDVEVCKSSTPEEVRKHKKAVGFCLSKDKKNIIP>EEGKESLA>DDVGQTTDDRDA |
Parental | TFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANC |
TFVKMLP...C.YALYD.T.ETK.SKKED.VFIF.A.E.A.LKSKMI..SSKDAIKKKL..IKHELQAN. | |
Retrocopy | TFVKMLPHNYCHYALYDTTHETKDSKKEDPVFIFCALEPALLKSKMISVSSKDAIKKKLMDIKHELQANL |
Parental | -YEEVKDRCTLAEKLGGSAVISLEGKP |
.YEEVK.RCTL.EKLG.S.VISLEGKP | |
Retrocopy | *YEEVKNRCTLSEKLGASVVISLEGKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 262 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 177 .36 RPM |
SRP017611_liver | 0 .10 RPM | 58 .83 RPM |