RetrogeneDB ID: | retro_fcat_991 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:119474410..119474679(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013272 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.24 % |
Parental protein coverage: | 54.22 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | FVKMLPDKDCRYALYDATYETKESKKE-DLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANC |
FVK.L..K.C.Y.L.DA..E..ESKK..DLVFI....E.A.L.S....ASS.D.I.KKL..IKHELQANC | |
Retrocopy | FVKTLLAKVCCYSLCDAN*EMEESKKG<DLVFILRTSESALLGSRTTHASS*DVI*KKLMEIKHELQANC |
Parental | YEEVKDRCTLAEKLGGSAVIS |
.E.....CTLAEKLGG...IS | |
Retrocopy | *EKFRHQCTLAEKLGGGSIIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 262 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 177 .36 RPM |
SRP017611_liver | 0 .00 RPM | 58 .83 RPM |