RetrogeneDB ID: retro_mputfur_1162

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897029.1:2574017..2574941(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000011513
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENO1
• Ensembl ID: ENSMPUG00000006382
• Aliases: None
• Description: enolase 1, (alpha) [Source:HGNC Symbol;Acc:3350]

Sequence

>retro_mputfur_1162
ATGTCTGTTCTCAAGATCCATGCCAGAGAGATCTTTGACTCTCGTGGGAATCCCACCGTTGAGGTTGACCTCTACACCTC
TAAAGGTCTCTTCAGAGCTTTGTGCCCAGTGGTGCGACCACTGGTATCTACGAGGCCCTCAAGCTCTGGGACAATCCCCA
CTACATAGGGAAAGTTGTCTCAAAGGTTGTTGAGCACATCAATAAAACTATTGCTCCTGCCCTGATTAGCAAGACACTGA
ATGTCGTGGAGCAAGAGAAAACTGACAGACTGATGATCGAGATGGATGGAACAGAAAATAAATCTAAATTTGGTGCGAAC
ACCATTCTGGGTGTGATCCTGGCTGTCTGCAAGGCAGGGGCTGTCGAGAAGGGGGTGCCTCTGTACCGCCACACTGCCGA
CTTGGCAGGCAATTCCGAAGTCATCCTGCGGGTTCTGGCTTTCAACGTCCCCAACGGTGGCTTCCACGCCAGCAACAAGC
TGGTCAAGCAGGAGTTCATGATCCTGCCTGTGGGTGCAGCTGGCTTCTGGGAGGCCATGCGCATCAGGGCTGAGGTCTAC
CACAACCTGAAGAATGTTATCAAGGAGAAATACGGGAAGGAGCCACCAACGCGGGGGATGAAGGCAGGTTTGCACCTAAC
ATCCTGGAGAACAAAGAAGCTCTGGAGCTGCTGAAGAATGCCATCAGGACAGCCGGCTACACTGACAAGGTGGTCATGGC
ATGGAAGTAGCTGCCTCAGAGTTCTTCTGGTCGGGCAAGTATGACCTGGACTTTAAGTCTCCCAATGACCCCAGCAGGTA
CTTCATGTCCGACGAGCTGGCCAACTTATACAAGCCCTTTATCAAGGATTACCCAGTGGTGTCCATTGAAGACCCCTTTG
ACCAGGATGACTGGGAAGCTTGGCAGAAGTTCACTGCCAATGCC

Alignment

ORF - retro_mputfur_1162 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.17 %
• Parental protein coverage: 71.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSILKIHAREIFDSRGNPTVEVDLYTAKGLFRAA-VPSGASTGIYEALELRDNDKTRYMGKGVSRPVKYI
          MS.LKIHAREIFDSRGNPTVEVDLYT.KGLFRA..VPSGA.TGIYEAL.L.DN....Y.GK.VS..V..I
Retrocopy MSVLKIHAREIFDSRGNPTVEVDLYTSKGLFRAL<VPSGATTGIYEALKLWDNP--HYIGKVVSKVVEHI

Parental  NEFLAPALCTQKVNVVEQEKIDRLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAG
          N...APAL.....NVVEQEK.DRLMIEMDGTENKSKFGAN.ILGV.LAVCKAGAVEKGVPLYRH.ADLAG
Retrocopy NKTIAPALISKTLNVVEQEKTDRLMIEMDGTENKSKFGANTILGVILAVCKAGAVEKGVPLYRHTADLAG

Parental  NAEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHNLKNVIKEKYGKD-ATNVG
          N.EVIL.V.AFNV.NGG.HA.NKL..QEFMILPVGAA.F.EAMRI.AEVYHNLKNVIKEKYGK..ATN.G
Retrocopy NSEVILRVLAFNVPNGGFHASNKLVKQEFMILPVGAAGFWEAMRIRAEVYHNLKNVIKEKYGKE<ATNAG

Parental  DEGGFAPNILENKEALELLKNAIGKAGYTDKVVI-GMDVAASEFFRSGKYDLDFKSPDDPSRYITPDELA
          DEG.FAPNILENKEALELLKNAI..AGYTDKVV..GM.VAASEFF.SGKYDLDFKSP.DPSRY...DELA
Retrocopy DEGRFAPNILENKEALELLKNAIRTAGYTDKVVM<GMEVAASEFFWSGKYDLDFKSPNDPSRYFMSDELA

Parental  NLYKSFIKDYPVVSIEDPFDQDDWEAWQKFTASA
          NLYK.FIKDYPVVSIEDPFDQDDWEAWQKFTA.A
Retrocopy NLYKPFIKDYPVVSIEDPFDQDDWEAWQKFTANA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1162 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1162 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003483	2 retrocopies	retro_chof_1289, retro_chof_1811,
Callithrix jacchus	ENSCJAG00000000359	4 retrocopies	retro_cjac_1963, retro_cjac_2238, retro_cjac_3891, retro_cjac_438,
Erinaceus europaeus	ENSEEUG00000008602	2 retrocopies	retro_eeur_23, retro_eeur_243,
Macropus eugenii	ENSMEUG00000005942	11 retrocopies	retro_meug_1445, retro_meug_1521, retro_meug_353, retro_meug_472, retro_meug_494, retro_meug_652, retro_meug_664, retro_meug_765, retro_meug_794, retro_meug_874, retro_meug_888,
Macropus eugenii	ENSMEUG00000007840	1 retrocopy	retro_meug_96,
Monodelphis domestica	ENSMODG00000009521	1 retrocopy	retro_mdom_1794,
Mustela putorius furo	ENSMPUG00000006382	2 retrocopies	retro_mputfur_1162 , retro_mputfur_547,
Mus musculus	ENSMUSG00000063524	1 retrocopy	retro_mmus_109,
Oryctolagus cuniculus	ENSOCUG00000010086	1 retrocopy	retro_ocun_933,
Rattus norvegicus	ENSRNOG00000017895	1 retrocopy	retro_rnor_112,
Sarcophilus harrisii	ENSSHAG00000005522	1 retrocopy	retro_shar_304,