RetrogeneDB ID: | retro_eeur_243 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_221421:4932..5675(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000008602 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.98 % |
Parental protein coverage: | 57.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSILKIHAREIFDSRGNPTVEVDLYTNKGLFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSQAVEHIN |
MSILKIHAREIFDSRGNPTVEVDLYTNKGLFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSQAV.HIN | |
Retrocopy | MSILKIHAREIFDSRGNPTVEVDLYTNKGLFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSQAV*HIN |
Parental | NTIAPALVSKKLNVVEQEKIDKLMIEMDGTENKSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGN |
NTIAPALVSKKLNVVEQEKIDKLMIEM.GTENKSKFGANAILGVSLAVCKAGAV.KGVPLYRHIADLAGN | |
Retrocopy | NTIAPALVSKKLNVVEQEKIDKLMIEMNGTENKSKFGANAILGVSLAVCKAGAVAKGVPLYRHIADLAGN |
Parental | PEVILPVPAFNVINGGSHAGNKLAMQEFMILPAGAANFKEAMRIGAEVYHNLKNVIKEKYGKDATNVGDE |
PEVILPVPAFNVINGGSHAGNKLAMQEFMILPAGAANFKEA..IGAEVYHNLKNVIKEKYGKDATNVGDE | |
Retrocopy | PEVILPVPAFNVINGGSHAGNKLAMQEFMILPAGAANFKEAIYIGAEVYHNLKNVIKEKYGKDATNVGDE |
Parental | GGFAPNILENKEALELLKNAIAKAGYA-DKVVIGMDVAA |
GGFAP.ILEN..A.E.LKNAIAKAGYA.DKV....DVAA | |
Retrocopy | GGFAPSILENNRAME*LKNAIAKAGYA<DKVSSAWDVAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 42 .22 RPM | 335 .99 RPM |
SRP017611_kidney | 57 .20 RPM | 489 .29 RPM |
SRP017611_liver | 38 .91 RPM | 307 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies |
retro_eeur_23, retro_eeur_243 ,
|
Homo sapiens | ENSG00000074800 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009492 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000109 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005030 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |