RetrogeneDB ID: | retro_shar_304 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841280.1:913926..914900(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000005522 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.55 % |
Parental protein coverage: | 74.88 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | YMGKGVSKAVEHINKTI-AP-SLISKKLNVVEQEKIDKLMIEMDGSENKSKFGANAILGVSLAVCKAGAA |
YMGKG.SK...HINK.I..P....SKKLN..EQE.I.KL.IEMD.S.NKSKF..NAIL.VSLA.CK..AA | |
Retrocopy | YMGKGISKVATHINK*IYSP>TMLSKKLNIAEQEIINKLLIEMDSSNNKSKFISNAILEVSLAICKIRAA |
Parental | EKGVSLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGATTFKEAMRIGAEVYHNLKN |
EK.V.LY.HIA.L.GN.E.ILP.P.FNVIN.G..AG.KL.MQEFMILP.G..TFKEA...GAE.Y.NLKN | |
Retrocopy | EKMVFLYCHIAHLSGNDEIILPIPVFNVINSGFLAGKKLFMQEFMILPIGVATFKEALSTGAEIYYNLKN |
Parental | VIKQKYGQDATNVGDEGGFAPNILENKEALELLKEAIGKAGYTDKVVIGMDVAASEFFCSGKYDLDFKSP |
VIKQKYGQ.A.NV.D..GF.PNILE.KEAL.LLK.A.GKAGY.D.VVI.MDV.ASEFF.SGKY.LD..S. | |
Retrocopy | VIKQKYGQNA-NVQDKSGFPPNILEDKEALALLKNAKGKAGYIDMVVIVMDVVASEFF*SGKYELDINSA |
Parental | DDPSRYISPSELGDLYKTFIKDYPVVSIEDPFDQDD-WEAWKDFTATAGIQVVGDGLTVTNPKRIEKAVN |
DD..R.IS..E.GDLYK.FIKDY.VVSI.D.FD.DD.WE..K..........VG..L...N.K.IEK..N | |
Retrocopy | DDSRR*ISHFECGDLYKMFIKDYSVVSIKDLFD*DD>WEL*K-ISLLLQVSRVGNHLIMMNLKHIEKIMN |
Parental | EKACNCLLLKVNQIGSVTESLQACKLAQSNGWGVMVSHRSGETEDTFI |
EKACN.LLLKVNQI.S.T..L....LAQS.GW.VMVS....ETEDTFI | |
Retrocopy | EKACNFLLLKVNQIDSMTGFL*E*ELAQSSGWRVMVSPFFRETEDTFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003483 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000000359 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008602 | 2 retrocopies | |
Homo sapiens | ENSG00000074800 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009521 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006382 | 2 retrocopies | |
Mus musculus | ENSMUSG00000063524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010086 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004001 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009492 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000109 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005030 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017895 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005522 | 1 retrocopy |
retro_shar_304 ,
|
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy |