RetrogeneDB ID: | retro_mputfur_1491 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897168.1:1201890..1202493(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAR1 | ||
Ensembl ID: | ENSMPUG00000008615 | ||
Aliases: | None | ||
Description: | GAR1 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14264] |
Percent Identity: | 65.71 % |
Parental protein coverage: | 99.04 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | FRGGGR-GGFNRGGGFNRGGSNNHFRGGGGNFRGGGGGRGGFGRGGGRGGFNKGQDQGPPEHVVLLGEFL |
F.GGG..GGF...G.F....SN.HFR.GGGNFRG.GG.RGGF..GGG..GFN..QDQGPPEHV..LGEFL | |
Retrocopy | F*GGGQ>GGFDQRGSFICDHSNYHFRDGGGNFRGNGGHRGGF*QGGGHRGFNRDQDQGPPEHVAVLGEFL |
Parental | HPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYID |
.PCEDD.V.KCTT..N.....NA.VYLENKEQI.KV.EIFGQLRD..FS.KLS.NMK..SFKKLQK.YID | |
Retrocopy | YPCEDDLVYKCTTGKNA----NAAVYLENKEQISKVSEIFGQLRDVCFSIKLSANMKVFSFKKLQKSYID |
Parental | PYKLLPLQRFLPRPPGEKGPPRGGGR-GGRGGGRGGGGRGGRGGGFRG-GRGGGGFRGGRGGGGFRGRGH |
P.KLLP.QRFLPRPPG.K.PPR.GGR.GG.GGG.G..G.G.RG...R....G..G..GG.G...FRG..H | |
Retrocopy | P*KLLPSQRFLPRPPGGK*PPREGGR>GGGGGG*GDRGDGFRGRKRRS>SGGFRGGSGGGG---FRGKRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004605 | 2 retrocopies | |
Homo sapiens | ENSG00000109534 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008681 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003776 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021225 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008615 | 2 retrocopies |
retro_mputfur_1491 , retro_mputfur_689,
|
Mus musculus | ENSMUSG00000028010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016578 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003901 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004693 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014996 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016364 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013668 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000016318 | 1 retrocopy |