RetrogeneDB ID: retro_mputfur_442

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896910.1:851529..851988(+)
• Located in intron of: ENSMPUG00000002833

Retrocopy information

• Ensembl ID: ENSMPUG00000019912
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NME1
• Ensembl ID: ENSMPUG00000015559
• Aliases: None
• Description: NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:7849]

Sequence

>retro_mputfur_442
ACCATGGCCAACTGTGAACGCACCTTCATTGCCATCAAGCCCGATGGGGTCCAGCGCAGCCTCGTGGGAGAAATCACCAA
GCGTTTGGAGCAAAAGGGATTCCACCTCGTTGCTATGAAATTAATTCAGGCTTCTGAAGACCTTCTCAAGGAGCACTACA
TCGACCTGAAGGACCGTCCCTTCTTTACCGGCTTGGTCAAGTACATGCAGTCAGGGCCCGTGGTTGCCATGGTCTGGGAG
GGCCTGAATGTGGTGAAGACAGGCCAAGTGATGCTTGGGGAGACCAACCCTGCAGACTCCAAGCCTGGGACCAGCCGTGG
GGACTTCTGGATCCAAGTTGGCAGGCACATTATCCACGGCAGCGACTCCATGGAGAGTGCGGAAAAGGAGATTGGCTTGT
GGTTCCAGCCTGAAGAGCTGGTGGATTACAAGAGCTGTGCTCAGAGCTGGATCTACGAG

Alignment

ORF - retro_mputfur_442 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.46 %
• Parental protein coverage: 91.07 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TMASCERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLVAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQ
          TMA.CERTFIAIKPDGVQRSLVGEI.KR.EQKGF.LVAMKLIQASEDLLKEHYIDLKDRPFF.GLVKYMQ
Retrocopy TMANCERTFIAIKPDGVQRSLVGEITKRLEQKGFHLVAMKLIQASEDLLKEHYIDLKDRPFFTGLVKYMQ

Parental  SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEEL
          SGPVVAMVWEGLNVVKTG.VMLGETNPADSKPGT.RGDF.IQVGR.IIHGSDS.ESAEKEIGLWFQPEEL
Retrocopy SGPVVAMVWEGLNVVKTGQVMLGETNPADSKPGTSRGDFWIQVGRHIIHGSDSMESAEKEIGLWFQPEEL

Parental  VDYKSCAQSWIYE
          VDYKSCAQSWIYE
Retrocopy VDYKSCAQSWIYE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_442 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_442 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 32 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004651	1 retrocopy	retro_btau_1707,
Canis familiaris	ENSCAFG00000023628	7 retrocopies	retro_cfam_117, retro_cfam_1645, retro_cfam_37, retro_cfam_676, retro_cfam_69, retro_cfam_832, retro_cfam_96,
Gorilla gorilla	ENSGGOG00000016526	1 retrocopy	retro_ggor_71,
Monodelphis domestica	ENSMODG00000028492	1 retrocopy	retro_mdom_503,
Mustela putorius furo	ENSMPUG00000015559	5 retrocopies	retro_mputfur_1093, retro_mputfur_1357, retro_mputfur_442 , retro_mputfur_667, retro_mputfur_997,
Mustela putorius furo	ENSMPUG00000015573	4 retrocopies	retro_mputfur_1236, retro_mputfur_1590, retro_mputfur_327, retro_mputfur_912,
Mustela putorius furo	ENSMPUG00000016017	3 retrocopies	retro_mputfur_1024, retro_mputfur_1067, retro_mputfur_846,
Mus musculus	ENSMUSG00000091228	3 retrocopies	retro_mmus_2712, retro_mmus_3081, retro_mmus_581,
Nomascus leucogenys	ENSNLEG00000007919	2 retrocopies	retro_nleu_1029, retro_nleu_1030,
Oryctolagus cuniculus	ENSOCUG00000022135	1 retrocopy	retro_ocun_1728,
Pan troglodytes	ENSPTRG00000009415	1 retrocopy	retro_ptro_91,
Rattus norvegicus	ENSRNOG00000002693	3 retrocopies	retro_rnor_1198, retro_rnor_1600, retro_rnor_704,