RetrogeneDB ID:

retro_mputfur_442

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896910.1:851529..851988(+)
Located in intron of:ENSMPUG00000002833
Retrocopy
information
Ensembl ID:ENSMPUG00000019912
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:NME1
Ensembl ID:ENSMPUG00000015559
Aliases:None
Description:NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:7849]


Retrocopy-Parental alignment summary:






>retro_mputfur_442
ACCATGGCCAACTGTGAACGCACCTTCATTGCCATCAAGCCCGATGGGGTCCAGCGCAGCCTCGTGGGAGAAATCACCAA
GCGTTTGGAGCAAAAGGGATTCCACCTCGTTGCTATGAAATTAATTCAGGCTTCTGAAGACCTTCTCAAGGAGCACTACA
TCGACCTGAAGGACCGTCCCTTCTTTACCGGCTTGGTCAAGTACATGCAGTCAGGGCCCGTGGTTGCCATGGTCTGGGAG
GGCCTGAATGTGGTGAAGACAGGCCAAGTGATGCTTGGGGAGACCAACCCTGCAGACTCCAAGCCTGGGACCAGCCGTGG
GGACTTCTGGATCCAAGTTGGCAGGCACATTATCCACGGCAGCGACTCCATGGAGAGTGCGGAAAAGGAGATTGGCTTGT
GGTTCCAGCCTGAAGAGCTGGTGGATTACAAGAGCTGTGCTCAGAGCTGGATCTACGAG

ORF - retro_mputfur_442 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.46 %
Parental protein coverage: 91.07 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTMASCERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLVAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQ
TMA.CERTFIAIKPDGVQRSLVGEI.KR.EQKGF.LVAMKLIQASEDLLKEHYIDLKDRPFF.GLVKYMQ
RetrocopyTMANCERTFIAIKPDGVQRSLVGEITKRLEQKGFHLVAMKLIQASEDLLKEHYIDLKDRPFFTGLVKYMQ
ParentalSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEEL
SGPVVAMVWEGLNVVKTG.VMLGETNPADSKPGT.RGDF.IQVGR.IIHGSDS.ESAEKEIGLWFQPEEL
RetrocopySGPVVAMVWEGLNVVKTGQVMLGETNPADSKPGTSRGDFWIQVGRHIIHGSDSMESAEKEIGLWFQPEEL
ParentalVDYKSCAQSWIYE
VDYKSCAQSWIYE
RetrocopyVDYKSCAQSWIYE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_442 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_442 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 32 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000046511 retrocopy
Canis familiaris ENSCAFG000000236287 retrocopies
Gorilla gorilla ENSGGOG000000165261 retrocopy
Monodelphis domestica ENSMODG000000284921 retrocopy
Mustela putorius furoENSMPUG00000015559 5 retrocopies
Mustela putorius furoENSMPUG000000155734 retrocopies
Mustela putorius furoENSMPUG000000160173 retrocopies
Mus musculus ENSMUSG000000912283 retrocopies
Nomascus leucogenys ENSNLEG000000079192 retrocopies
Oryctolagus cuniculus ENSOCUG000000221351 retrocopy
Pan troglodytes ENSPTRG000000094151 retrocopy
Rattus norvegicus ENSRNOG000000026933 retrocopies



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