Parental gene:

Nme1, ENSRNOG00000002693

Aliases:None
Description:Nucleoside diphosphate kinase A [Source:UniProtKB/Swiss-Prot;Acc:Q05982]
Organism:Rat (Rattus norvegicus)
Coordinates:10:81487114..81496485(-)


>ENSRNOG00000002693
ATGGCCAACAGCGAGCGTACCTTCATCGCCATCAAGCCTGATGGGGTCCAGCGGGGGCTTGTGGGAGAGATCATCAAGCG
ATTCGAGCAGAAGGGATTCCGCCTGGTTGGTTTGAAATTTATACAGGCTTCAGAGGATCTTCTCAAGGAGCACTACATTG
ACCTGAAGGACCGCCCCTTCTTTTCTGGCCTGGTGAAGTACATGCACTCAGGACCGGTGGTTGCTATGGTCTGGGAGGGA
CTGAATGTTGTGAAGACAGGCCGGGTGATGCTTGGAGAGACCAACCCCGCAGACTCTAAGCCTGGGACCATACGAGGAGA
CTTTTGCATTCAAGTTGGCAGGAACATCATTCATGGCAGCGATTCTGTGGAGAGTGCGGAGAAGGAGATCAGTTTGTGGT
TTCAGCCTGAGGAGCTGGTGGACTACAAGAGCTGTGCGCAGAACTGGATCTATGAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 18 .36 RPM
SRP017611_kidney 25 .19 RPM
SRP017611_brain 67 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004651 ortholog_one2one 1 retrogene
retro_btau_1707,
Canis familiaris ENSCAFG00000023628 ortholog_one2many 7 retrogenes
retro_cfam_117, retro_cfam_1645, retro_cfam_37, retro_cfam_676, retro_cfam_69, retro_cfam_832, retro_cfam_96,
Gorilla gorilla ENSGGOG00000016526 ortholog_one2one 1 retrogene
retro_ggor_71,
Monodelphis domestica ENSMODG00000028492 ortholog_one2one 1 retrogene
retro_mdom_503,
Mustela putorius furo ENSMPUG00000015559 ortholog_one2one 5 retrogenes
retro_mputfur_1093, retro_mputfur_1357, retro_mputfur_442, retro_mputfur_667, retro_mputfur_997,
Mus musculus ENSMUSG00000091228 possible_ortholog 3 retrogenes
retro_mmus_2712, retro_mmus_3081, retro_mmus_581,
Nomascus leucogenys ENSNLEG00000007919 ortholog_one2one 2 retrogenes
retro_nleu_1029, retro_nleu_1030,
Oryctolagus cuniculus ENSOCUG00000022135 ortholog_one2one 1 retrogene
retro_ocun_1728,
Pan troglodytes ENSPTRG00000009415 ortholog_one2one 1 retrogene
retro_ptro_91,
Rattus norvegicus ENSRNOG00000002671 within_species_paralog 8 retrogenes
retro_rnor_1129, retro_rnor_1610, retro_rnor_1708, retro_rnor_1784, retro_rnor_1966, retro_rnor_2646, retro_rnor_2951, retro_rnor_628,
Rattus norvegicus ENSRNOG00000049152 within_species_paralog 1 retrogene
retro_rnor_2679,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_704 90.79 100.00
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2. retro_rnor_1198 78.64 67.76
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3. retro_rnor_1600 65.22 75.66
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Download FASTA sequences of all ENSRNOG00000002693 retrocopies