RetrogeneDB ID: | retro_ocun_1531 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | AAGW02078537:25445..25899(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA2 | ||
Ensembl ID: | ENSOCUG00000003591 | ||
Aliases: | None | ||
Description: | F-actin-capping protein subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q09YN4] |
Percent Identity: | 67.95 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | NRICFKFDHLRKEATDPRP-YEAENAIE-SWRSSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIE |
NR.CFKF.H.RK..TDPR...EAEN.I..S.R.S.ET.L.AYVKEH.P.GVCTV..KKIDGQQTIIACIE | |
Retrocopy | NRLCFKFGHFRK*VTDPRS<QEAENVID<SGRRSAETDLCAYVKEHDPKGVCTV*SKKIDGQQTIIACIE |
Parental | SHQFQAKNFWNGRWRSEWKFTVTPSITQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEAQTAKEFI |
.HQF.AKNFWNG.WRSE....VTPSI.QVVGIL.IQV..YEDG.VQLVSHKD.......SNEAQ.AK... | |
Retrocopy | NHQFEAKNFWNGPWRSERMLSVTPSIIQVVGILTIQVPHYEDGIVQLVSHKDLFPN--ESNEAQIAK*LT |
Parental | KIVEAAENEYQTAISE |
KI.....NEY.TA.SE | |
Retrocopy | KII*TVRNEY*TAVSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 71 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .71 RPM |
SRP017611_liver | 0 .00 RPM | 12 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004925 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007677 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005771 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016226 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009063 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000019711 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000012158 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000707 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007910 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000270 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003591 | 2 retrocopies |
retro_ocun_1531 , retro_ocun_873,
|
Pongo abelii | ENSPPYG00000017933 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026942 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024828 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012657 | 2 retrocopies |